{ "cells": [ { "cell_type": "markdown", "id": "923480fdd0575e4f", "metadata": {}, "source": [ "# MNE: Experiment Name\n", "\n", "\n", "Lead authors: First Name Last Name \n", "\n", "- Description of experiment\n", "The `Experiment Name` code experiment in `Used Coding Library` can be found here:\n", "\n", "[Experiment Name Code](https://www.google.com)" ] }, { "cell_type": "markdown", "id": "b316439776c43a9c", "metadata": {}, "source": [ "## Importing data \n", "\n", "The data used in this notebook is hosted on `NYU BOX`. Permissions are given upon request.\n", "\n", "- Install the BOX app from [here](https://www.box.com/resources/downloads)\n", "- Set an environment variable with name `MEG_DATA` to the path of the Data folder e.g.,\n", " - `C:\\Users\\user_name\\Box\\MEG\\Data`\n", " - or `C:\\Users\\user_name\\Box\\Data\n", "\n", "## MNE setup\n", "\n", "\n", "Make sure that:\n", "- MNE is installed in MATLAB\n", "- MNE 1.10.2 version has been used for this notebook\n" ] }, { "cell_type": "markdown", "id": "628d494b81032095", "metadata": {}, "source": [ "Example for KIT\n", "\n", "Each experiment run using the KIT system generates a `.con` file and two or more .mrk files.\n" ] }, { "cell_type": "markdown", "id": "f2fcf066cd1ab8cf", "metadata": {}, "source": [ "Example for OPM\n", "\n", "Each experiment run using the OPM system generates a `.fif` file. We will work with the `.fif` generated by the Fieldline OPM file set below, the .fif file contains all sensor measurements during the experiments and trigger channels data." ] }, { "cell_type": "markdown", "id": "ea59b301", "metadata": {}, "source": [ "## Spatio-temporal clustering using MNE " ] } ], "metadata": { "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.12.2" } }, "nbformat": 4, "nbformat_minor": 5 }